INPUT QUERY
TYPE DNA
TARGET PDB
METHOD SW -G 13
MATRIX BLOSUM 62
SCORE 25
ALIGN 25
SEQ
AGTCTGTGTGCACTGCAAAACGTCGTACTGCAGTCTGTGTGCACTGCAAAAGTCGTCGTGACACACACTGCT
GCGTACATGCACTGCTGACTGCGTACGAGAGTCTGATATGCTGCACGTCGTACTGCAGTCTGTGTGCACTGC
AAAACGTCGTACTGCTGACACACACTGCTGCGTACATGCACTGCTGTGACACACACTGCTGCGTACATGCAC
TGCTGTGACACACACTGCTGCGTACATGCACTGCTGTGACACACACTGCTGCGTACATGCACTGCTGTGACA
CACACTGCTGCGTACATGCACTGCTGTGACACACACTGCTGCGTACATGCACTGCTG
END
RESULTS
**********************************************************************
* We use the following releases of databases: *
* *
* SwissProt: Release 35 of November 1997 *
* Genbank: weekly update *
* Genome Sequence Database(GSDB-LANL): monthly update *
* PDB: Release of Oct 1996 *
* Prosite: Release 13.0 of December 1995 *
* dbEST: Weekly update *
* Genpept: Release of Dec 1997 *
* BLOCKS: Release of May 1997 *
* Repetitive DNA: Release of December 1995 *
**********************************************************************
, len = 345
*******PDB************PDB***********PDB************PDB************PDB*******
MATCHING SEQUENCES
The top 25 matching sequences score
>1ERD PHEROMONE 43
>1TFI TRANSCRIPTION REGULATION 33
>1TCA HYDROLASE(CARBOXYLIC ESTERASE) 33
>1RAL OXIDOREDUCTASE 32
>1RAL OXIDOREDUCTASE 32
>1GAT TRANSCRIPTION REGULATION 32
>2ABX POSTSYNAPTIC NEUROTOXIN 32
>1KBA TOXIN 31
>1NBT TOXIN 31
>1FUS HYDROLASE(ENDORIBONUCLEASE) 31
>1WSY LYASE(CARBON-OXYGEN) 31
>1ATT SERINE PROTEINASE INHIBITOR 30
>1PDG GROWTH FACTOR 30
>2LZM HYDROLASE (O-GLYCOSYL) 28
>1CHC VIRUS 28
>1FAS TOXIN 28
>1ENG HYDROLASE(GLYCOSIDASE) 28
>1PNH TOXIN 28
>1CHC VIRUS 28
>1GPD OXIDO-REDUCTSE(ALDEHYDE/DONR,NAD/A 28
>5ZNF ZINC FINGER DNA BINDING DOMAIN 27
>1EPS TRANSFERASE 27
>1HUM CYTOKINE(CHEMOTACTIC) 27
>1FD2 ELECTRON TRANSFER(IRON-SULFUR PROT 26
>1BNH RIBONUCLEASE INHIBITOR 26
Hit 1 >1ERD PHEROMONE
Query: 36 X-Y-AARRTAVCVHCKTSYCXHTLLRTCTAVT 65
.........:.:.:....::...:..::...:
Sbjct: 1 DPMTCEQAMASCEHTMCGYCQGPLYMTCIGIT 32
Hit 2 >1TFI TRANSCRIPT
Query: 34 RVXYAARRTAVCVHCKTSYCXHTLLRTCTAVTHTAAYMHC 73
...........:..::...:..:...:..:.........:
Sbjct: 1 KTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVC 40
Hit 3 >1TCA HYDROLASE(
Query: 2 LCALQNVVLQSVCTAKVVVTHTAAYMHCXLRTRVXYAARRTAV 44
:....::..:.::....:..:.:......:.....:...:.:.
Sbjct: 204 LFNGKNVQAQAVCGPLFVIDH-AGS----LTSQFSYVVGRSAL 241
Hit 4 >1RAL OXIDOREDUC
Query: 1 SLCALQNVVLQSVCT 15
..:......:.:.::
Sbjct: 204 DYCKSKDIILVSYCT 218
Hit 5 >1RAL OXIDOREDUC
Query: 1 SLCALQNVVLQSVCT 15
..:......:.:.::
Sbjct: 204 DYCKSKDIILVSYCT 218
Hit 6 >1GAT TRANSCRIPT
Query: 39 ARRTAVCVHCKTS 51
.:...::..:.::
Sbjct: 1 KRAGTVCSNCQTS 13
Hit 7 >2ABX POSTSYNAPT
Query: 46 VHCKTSYCXHTLLRTCTAVTHTAAYMHCCDTHCCVHALLXHTLLRTCTAVTHTAAYMHCC 105
..:.:.........::............::..:.........................::
Sbjct: 1 IVCHTTATIPSSAVTCPPGENLCYRKMWCDAFCSSRGKVVELGCAATCPSKKPYEEVTCC 60
Query: 106 DTHCCVH 112
.:..:.:
Sbjct: 61 STDKCNH 67
Hit 8 >1KBA TOXIN
Query: 53 CXHTLLRTC-TAVTHTA-AYMHC-CDTHCCVHA-LLXHTLLRTCTAVTHTAAYMHCCDTH 108
:......:..:.............::..:.............::...........::.:.
Sbjct: 3 CLISPSSTPQTCPNGQDICFLKAQCDKFCSIRGPVIEQGCVATCPQFRSNYRSLLCCTTD 62
Query: 109 CCVH 112
.:.:
Sbjct: 63 NCNH 66
Hit 9 >1NBT TOXIN
Query: 53 CXHTLLRTC-TAVTHTA-AYMHC-CDTHCCVHA-LLXHTLLRTCTAVTHTAAYMHCCDTH 108
:......:..:.............::..:.............::...........::.:.
Sbjct: 3 CLISPSSTPQTCPNGQDICFLKAQCDKFCSIRGPVIEQGCVATCPQFRSNYRSLLCCTTD 62
Query: 109 CCVH 112
.:.:
Sbjct: 63 NCNH 66
Hit 10 >1FUS HYDROLASE(E
Query: 1 SLCALQNVVLQSVCTAKVVVTHTAA 25
:......::....:......:::.:
Sbjct: 71 SP-GADRVVINTNCEYAGAITHTGA 94
Hit 11 >1WSY LYASE(CARBO
Query: 2 LCALQNVVLQSVCTAKVVVTHTAAYMHCXLRTRV 35
......:...::..:.:.:...:......::...
Sbjct: 115 YARCEQVGVDSVLVADVPVEESAPFRQAALRHNI 148
Hit 12 >1ATT SERINE PROT
Query: 10 LQSVCTAK 17
...:::::
Sbjct: 1 VEDVCTAK 8
Hit 13 >1PDG GROWTH FACT
Query: 14 CTAKVVVTHTAAYMHCXLRTRVXYAARR 41
..........:....:..::.:....::
Sbjct: 1 SLGSLTIAEPAMIAECKTRTEVFEISRR 28
Hit 14 >2LZM HYDROLASE (
Query: 1 SLCALQNVVLQ 11
..:::.:.:.:
Sbjct: 96 R-CALINMVFQ 105
Hit 15 >1CHC VIRUS
Query: 35 VXYAARRTAVCVHCKTSY-----CXHTLLRTC 61
....:.:...:......:.....:.:.....:
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVC 32
Hit 16 >1FAS TOXIN
Query: 76 THCCVHALLXHTLLRTC 92
:.:..:.......:..:
Sbjct: 1 TMCYSHTTTSRAILTNC 17
Hit 17 >1ENG HYDROLASE(G
Query: 63 AVTHTAAYMHCCDTHC 78
:......:..::...:
Sbjct: 1 ADGRSTRYWDCCKPSC 16
Hit 18 >1PNH TOXIN
Query: 67 TAAYMHCCDTHCCVHALLXHTLLRTCTAVTH 97
:......:...:....::.......:..:.:
Sbjct: 1 TVCNLRRCQLSCRSLGLLGKCIGVKCECVKH 31
Hit 19 >1CHC VIRUS
Query: 35 VXYAARRTAVCVHCKTSY-----CXHTLLRTC 61
....:.:...:......:.....:.:.....:
Sbjct: 1 MATVAERCPICLEDPSNYSMALPCLHAFCYVC 32
Hit 20 >1GPD OXIDO-REDUC
Query: 1 SLCALQNVVLQSVCTAKVV 19
...:.::....:...::.:
Sbjct: 198 G--AAQNIIPSSTGAAKAV 214
Hit 21 >5ZNF ZINC FINGER
Query: 41 RTAVCVHCKTSYCXHTLLRTCTAVTHT 67
.:..:..:.........:.:.....:.
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHS 27
Hit 22 >1EPS TRANSFERASE
Query: 1 SLCALQN---VVLQSVCTAK 17
::.::.......:...::::
Sbjct: 392 SLVALSDTPVTILDPKCTAK 411
Hit 23 >1HUM CYTOKINE(CH
Query: 1 SLCALQNVVLQS 12
:::....::.:.
Sbjct: 33 SLCSQPAVVFQT 44
Hit 24 >1FD2 ELECTRON TR
Query: 38 AARRTAVCVHCKTSYC 53
:...:..:..::...:
Sbjct: 1 AFVVTDNCIKCKYTDC 16
Hit 25 >1BNH RIBONUCLEAS
Query: 1 SLCALQNVVL 10
..:::...::
Sbjct: 421 G-CALEQLVL 429
*******PDB************PDB***********PDB************PDB************PDB*******